Index

_

_file_name (tfclass_predict.io_interface.IOInterface attribute) (tfclass_predict.IOInterface attribute) _generate_count_vectors() (in module tfclass_predict.prediction_manager) _init_BERT() (tfclass_predict.prediction_manager.PredictionManager method) (tfclass_predict.PredictionManager method)

_init_GPU() (tfclass_predict.prediction_manager.PredictionManager method) (tfclass_predict.PredictionManager method) _init_model() (tfclass_predict.Predictor method) (tfclass_predict.predictor.Predictor method)

B

bed_data (tfclass_predict.prediction_manager.PredictionManager attribute) (tfclass_predict.PredictionManager attribute) (tfclass_predict.Predictor attribute) (tfclass_predict.predictor.Predictor attribute)

bed_file (in module main) (tfclass_predict.io_interface.IOInterface attribute) (tfclass_predict.IOInterface attribute)

C

ClassAUC (class in tfclass_predict.predictor)

E

entry() (in module tfclass_predict.cmd_interface)

extract_fasta_sequences() (tfclass_predict.sequence_processor.SequenceProcessor method) (tfclass_predict.SequenceProcessor method)

F

file_name (tfclass_predict.io_interface.IOInterface attribute) (tfclass_predict.IOInterface attribute)

G

genome (tfclass_predict.sequence_processor.SequenceProcessor attribute) (tfclass_predict.SequenceProcessor attribute)

genome_file (tfclass_predict.io_interface.IOInterface attribute) (tfclass_predict.IOInterface attribute)

I

IOInterface (class in tfclass_predict) (class in tfclass_predict.io_interface)

iointerface (tfclass_predict.prediction_manager.PredictionManager attribute) (tfclass_predict.PredictionManager attribute)

K

kmers_to_tokens() (tfclass_predict.sequence_processor.SequenceProcessor method) (tfclass_predict.SequenceProcessor method)

M

main module model (tfclass_predict.Predictor attribute) (tfclass_predict.predictor.Predictor attribute) module main tfclass_predict tfclass_predict.cmd_interface tfclass_predict.constants tfclass_predict.io_interface tfclass_predict.prediction_manager tfclass_predict.predictor tfclass_predict.sequence_processor

N

NUM_CLASSES (in module tfclass_predict.constants)

P

predict() (tfclass_predict.prediction_manager.PredictionManager method) (tfclass_predict.PredictionManager method) predict_bed_data() (tfclass_predict.Predictor method) (tfclass_predict.predictor.Predictor method) PredictionManager (class in tfclass_predict) (class in tfclass_predict.prediction_manager)

Predictor (class in tfclass_predict) (class in tfclass_predict.predictor) predictor (tfclass_predict.prediction_manager.PredictionManager attribute) (tfclass_predict.PredictionManager attribute)

R

read_atac_seq_data() (tfclass_predict.io_interface.IOInterface method) (tfclass_predict.IOInterface method)

res_dir (tfclass_predict.io_interface.IOInterface attribute) (tfclass_predict.IOInterface attribute)

S

save_results() (tfclass_predict.prediction_manager.PredictionManager method) (tfclass_predict.PredictionManager method) sequence_to_kmers() (tfclass_predict.sequence_processor.SequenceProcessor method) (tfclass_predict.SequenceProcessor method)

SequenceProcessor (class in tfclass_predict) (class in tfclass_predict.sequence_processor) (tfclass_predict.Predictor attribute) (tfclass_predict.predictor.Predictor attribute)

T

tfclass_predict module tfclass_predict.cmd_interface module tfclass_predict.constants module tfclass_predict.io_interface module tfclass_predict.prediction_manager module

tfclass_predict.predictor module tfclass_predict.sequence_processor module tokenizer (tfclass_predict.prediction_manager.PredictionManager attribute) (tfclass_predict.PredictionManager attribute) (tfclass_predict.Predictor attribute) (tfclass_predict.predictor.Predictor attribute) (tfclass_predict.sequence_processor.SequenceProcessor attribute) (tfclass_predict.SequenceProcessor attribute)

W

write_predictions() (tfclass_predict.io_interface.IOInterface method) (tfclass_predict.IOInterface method)