tfclass_predict.io_interface

Classes

Module Contents

class tfclass_predict.io_interface.IOInterface(bed_file: str, genome_file: str, res_dir: str)

bed_file

file_name

genome_file

res_dir

read_atac_seq_data(): Reads ATAC-seq regions from BED file that was given in the initalizer. :return: BED file input as pd.DataFrame.

write_predictions(counts_vec, pred_dict, bed_data): Writes predictions and count vectors to output files. :param counts_vec: Count vectors from Predictor.predict function. :param pred_dict: Dictionary from Predictor.predict function. :param bed_data: Dataframe from BED file. :return: